rs31952743 SNP Detail

Summary

• ID
  rs31952743
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:43858154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGACCTTT TATGCCCTTT
  ATTTCTTCCT TATGAGGTCT ATAGGTTTTT AATGTCATCT TTTATGAAAC CATCTCCTTT
  GATCTTGGGC TATAGTTATC TCTTTTTTAG AACAGTTAAG TAAGCAAGAA TCATTAACCT
  TAGTGAGTTC CTCCTGCAGA GTGCACCAAG GGCAACCGGA GGAACCGGTT TCTGTGGTAG
  M
  CTGCAAAGAG GCTTAATTTC CTTGTAGAAT CTTTAGACAA ATTATCAAAG ACGCTTCTAA
  AGGTCTTTTG TTCCCAGGAA ACTCCGCTGC AATCACAATC TAAGAATTGT CATGAGAGTA
  AGCATCACAA GAGATAGAAG GGCTCAAGTC CTTTCCTAGG GTGAGGGCAG GGGCCTGCAG
  CATCTTCTCC ACAGGTCCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49295160	NES12688960	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31952743					SNP	A	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49295160	NES12688960	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:43858154 () rs orientation: forward

Symbol	Name	Function Class
Rr345822	regulatory region 345822	1847 bp proximal
Rr348914	regulatory region 348914	46 bp proximal
Rr356243	regulatory region 356243	1872 bp proximal
Rr393629	regulatory region 393629	within coordinates