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rs31952930 SNP Detail
Summary
  • ID
    rs31952930
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr5:99654467 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGTAAGAACT TTAGTAGCCA
    CAGATGCCTT GTATTGTGCT GTTTTGTGTT GTGTTGTGTT GTGTTATTGG CCATCTAAGT
    ATAGTTTGGG GGGATCAACA AAGCACACAT TGCCACACAC ATTCGTCATC CATTGCTTGT
    TGTACACTCT GCCCATTCTA GACTAGGTCC TTAATTAACG AATTTCTACT CAGAGAAATA
    R
    GTATAAGGAG ATAAAACTCA ATTATTGACA ACTGATGTTC AGGGGCATTC TACACAGACC
    CTTTGCAGAT CATTTTTTCA TAGCTCCATG TGATCCTGAA ATCTAGGATT GGTTCTGGTT
    TTCCAGGTAA CATTACTTGG ATAACAATAG ACTCTGCTGT AAGGAAGTAT GAAGGAAATG
    CCCAGGTACT AGCCAGGAAA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46623106 NES10392956 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A A A A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs31952930 SNP A A A A A A G A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46623106 NES10392956 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:99654467 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
A930011G23Rik RIKEN cDNA A930011G23 gene within coordinates
Gm35172 predicted gene, 35172 1765 bp upstream
Gm35253 predicted gene, 35253 within coordinates
Rr615301 regulatory region 615301 1737 bp distal
Rr615302 regulatory region 615302 1905 bp distal
Tssr47464 transcription start site region 47464 1765 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory