rs31953564 SNP Detail

Summary

• ID
  rs31953564
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:99869295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATTTGCT TTAGAAACAG
  CTGACCAAAT GGGGTTTGGT TTGGTTTGGT TTGGTTTGGT TTGGTTTGGT TTGGTTTGCT
  TTGCTTTGCT TTGGTTTGGT TTCAGATGCT TGAAGCCCAG TAGACTGACC AAGTAGATCA
  GATGGTGCAG GAGTCTTCTT TTACCAGACA AAAAGAGTTC AAGGATCCAC TCCAAGGTAC
  R
  AACTACTCTA ACAGGCAAAT GAGAGAGAGG AACAGGGCGG GGGTGGGCAG TAGAATTTTC
  TTAAAGAAAG GGTAGAGTTG ACAGAAACAC AAAACTGGAA AGGTCCATAG AATATGTCAT
  GCCTTGCTAT GAGCGCATGA CAGGAAGAAA TAAACACAAT TCTGGAGCAC TGTTTAAAAT
  AAAATAAAAT AAAATAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss46623658	NES10404331	PERLEGEN	MM_PANEL2	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs31953564					SNP	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46623658	NES10404331	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:99869295 () rs orientation: forward

Symbol	Name	Function Class
A930011G23Rik	RIKEN cDNA A930011G23 gene	within coordinates
Gm73153	predicted gene, 73153	within coordinates
Rr119571	regulatory region 119571	295 bp distal
Tssr52054	transcription start site region 52054	546 bp downstream