rs31953565 SNP Detail

Summary

• ID
  rs31953565
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:99869828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCCCAGG ATAGAACGTT
  AGAATCTCCC ATTGACAGTG TAATAATGCG TACATAGAGT GCGGAGATAA TGGGGTGATC
  CAAATTGTTT TGTAAAAATA GAATCTTATT ATCCATTATC CTATACAGAA ATCCTTTTCA
  AATTATGAGT TACCACCCAT GAAATCAATT TAGTTGGTCT TTACCAGTTT GTCTTTTAAC
  R
  GGATGGAAGA AATGGTAAAA AAAGAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAGGACTA
  CTGCAGGTAG AGCATGCCGC GCGGTGTGTG AGAAGGGCCA TTGTTCTTGC AACTTAATTT
  CAGGGTTATA GTTGAAGAAA AAAAACACTG TGCAAAGCAA AATATCTTTC TTACTCTGAG
  TTACAGTCAA AACAGCTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss46623659	NES10404332	PERLEGEN	MM_PANEL2	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs31953565					SNP	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46623659	NES10404332	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:99869828 () rs orientation: forward

Symbol	Name	Function Class
A930011G23Rik	RIKEN cDNA A930011G23 gene	within coordinates
Gm73153	predicted gene, 73153	181 bp upstream
Rr119571	regulatory region 119571	828 bp distal
Rr130735	regulatory region 130735	1973 bp proximal
Tssr52054	transcription start site region 52054	13 bp downstream