rs31953581 SNP Detail

Summary

• ID
  rs31953581
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133854262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAT CCAGTGGAGG GAGTGGCCAG
  Y
  CCTAGCTGGG CTGACATTCT CTGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45589830	mCV24805093	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss147518505	ENSMUSSNP2297432	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss321345445	CHEV_4_133682866	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31953581					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133854262 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15028	CpG island 15028	1301 bp proximal
Gm68742	predicted gene, 68742	1992 bp downstream
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	455 bp downstream
Tssr39535	transcription start site region 39535	584 bp upstream
Tssr39536	transcription start site region 39536	667 bp upstream
Tssr39537	transcription start site region 39537	957 bp upstream
Tssr43866	transcription start site region 43866	676 bp downstream
Tssr43867	transcription start site region 43867	736 bp downstream
Tssr43868	transcription start site region 43868	772 bp downstream
Tssr43869	transcription start site region 43869	847 bp downstream
Tssr43870	transcription start site region 43870	1000 bp downstream
Tssr43871	transcription start site region 43871	1048 bp downstream
Tssr43872	transcription start site region 43872	1078 bp downstream
Tssr43873	transcription start site region 43873	1101 bp downstream
Tssr43874	transcription start site region 43874	1131 bp downstream
Tssr43875	transcription start site region 43875	1729 bp downstream
Tssr43876	transcription start site region 43876	1756 bp downstream
Ubxn11	UBX domain protein 11	167 bp downstream