rs31953764 SNP Detail

Summary

• ID
  rs31953764
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:43857503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGTCTCT CCAACTGATA
  GCTCAAGCCT TCTTTATTTA TACAAGCTCC AAAGCATTCA AACATGAGCA GTTTCAATTC
  ATTTCTCTTT CATCGTTTTC AAGAATTACT AACATTTACC CATTTCAGTG TCTTTTCCTC
  CTCCCCACTC CTTTGTCGTC ATTAATTGAC CTTTACTCTG TATCTAAGCA TTAATTAACC
  W
  TTACTTCATA TCTAAGCATG AATTTTATAT TGCAAGCCAA GGGATTATAT CTAGCCAGGC
  ACCTCCTATT CGTACTTTGC CCAGGCCAGC AGCAGATATG CCATTACAGA AATGAAAGAT
  ACTCAAGCTC TGTCAACAGA CTGTCTTTAA CAGTATATTG TTATATTGTT ATTGGTTTTA
  TATTTTTGAT GTCAGCAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49295164	NES12688956	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31953764					SNP	A	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49295164	NES12688956	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:43857503 () rs orientation: forward

Symbol	Name	Function Class
Rr393629	regulatory region 393629	167 bp upstream
Rr537115	regulatory region 537115	within coordinates