rs31953765 SNP Detail

Summary

• ID
  rs31953765
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:43857377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAAGGTG GGGCCGGGGG
  TGGGGGTGAG GAATAACTAC TGCTGAGTGC CAGAGTACTG CTCTAGCAAG GTTCTGGACC
  ACAGGACAGA TGTGTAAAGT CGGCGAGAAT GAGGAGTCTT ACCACCAGTT GTCTCTCCAA
  CTGATAGCTC AAGCCTTCTT TATTTATACA AGCTCCAAAG CATTCAAACA TGAGCAGTTT
  Y
  AATTCATTTC TCTTTCATCG TTTTCAAGAA TTACTAACAT TTACCCATTT CAGTGTCTTT
  TCCTCCTCCC CACTCCTTTG TCGTCATTAA TTGACCTTTA CTCTGTATCT AAGCATTAAT
  TAACCTTTAC TTCATATCTA AGCATGAATT TTATATTGCA AGCCAAGGGA TTATATCTAG
  CCAGGCACCT CCTATTCGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49295165	NES12688955	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31953765					SNP	T	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49295165	NES12688955	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:43857377 () rs orientation: forward

Symbol	Name	Function Class
Rr348914	regulatory region 348914	823 bp proximal
Rr393629	regulatory region 393629	293 bp upstream