rs31953773 SNP Detail

Summary

• ID
  rs31953773
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:43856596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATAACTA TATAGAAATT
  CACTTAGAAG TATAGTCTTT GAGTCTGGTT AATTTTGATG TATAATGCTT ATTTTATTTG
  CAAGTTTTAA TAATAAAGTT GAAAAATTAT AATGATTTAG AGAGCTTTCC TTTGCAGGCT
  ATCAAAAATT TTAAATGTCA TCTTTCTGAT TGTGTATAGT ACTGTAAGAC AGTGCCTCAA
  Y
  CCTGACATCC TGGACAGCTT CAGAGAAATA GTCACAATTG TCATTCCTTG AGTAAGCAAT
  TTGGTTCTCA AGACATGATC ATTGTTGCTC AGAGGCAGTC TCAGTTTCCA ATACCAGACA
  ATGGATCCTG TATTGGGTAT GGGTTTGGGT GTGGTTTCAG TCACTGTGGT TTCAGAGAAA
  TCTATTGGTA AAACTTACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	PWD/PhJ
ss49295173	NES12688947	PERLEGEN	MM_PANEL2	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	PWD/PhJ
rs31953773					SNP	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49295173	NES12688947	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:43856596 () rs orientation: forward

Symbol	Name	Function Class
Rr348914	regulatory region 348914	1604 bp proximal
Rr393629	regulatory region 393629	1074 bp upstream