rs31954092 SNP Detail

Summary

• ID
  rs31954092
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:46346608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAAACTAC TTTTCTGAAG AAGGTTGGAA CGGTTTGCTC
  TGGGCTGGCC ATCAGAGGCA GGGAGCTGTG TGGAAATGGT CTGATTTACA GTTATTTTGG
  W
  GGTCCTCTGT CTCAATAAGC CCTAGACATT TTTCTTCTTT GGGGGATATT TTGTAATTTC
  TCCCCTGTGA CAGAGAAATC CAAAAAGTAT ACATATTTCC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49295348	NES12771716	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31954092					SNP	A	A	A	A	A	A	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49295348	NES12771716	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:46346608 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10017	CpG island 10017	743 bp distal
Rr352866	regulatory region 352866	within coordinates
Trim36	tripartite motif-containing 36	934 bp upstream
Tssr153216	transcription start site region 153216	1080 bp upstream
Tssr153217	transcription start site region 153217	951 bp upstream
Tssr153218	transcription start site region 153218	907 bp upstream
Tssr153219	transcription start site region 153219	720 bp upstream