rs31954093 SNP Detail

Summary

• ID
  rs31954093
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:46346556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATTTGCT TCGCCATCTA
  CTTCTCTGTT CTAGGCTTTC TCTGAGTCAT AGGACTTTAT TTATTTATTT ATTTATTTAT
  TTATTTATTT ATTTGCAACT GACAGTGATA ATTAGATTGC ACATGAACAC CATTGGACAA
  AAACACCTCT TCAGGAAACT ACTTTTCTGA AGAAGGTTGG AACGGTTTGC TCTGGGCTGG
  Y
  CATCAGAGGC AGGGAGCTGT GTGGAAATGG TCTGATTTAC AGTTATTTTG GAGGTCCTCT
  GTCTCAATAA GCCCTAGACA TTTTTCTTCT TTGGGGGATA TTTTGTAATT TCTCCCCTGT
  GACAGAGAAA TCCAAAAAGT ATACATATTT CCTCTTCTCT CTCAACCTGC TTTCCTCTTA
  GCTCTCCTTA ATGCTGCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss49295349	NES12771715	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs31954093					SNP	C	C	C	C	C	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49295349	NES12771715	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:46346556 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10017	CpG island 10017	691 bp distal
Rr352866	regulatory region 352866	within coordinates
Trim36	tripartite motif-containing 36	882 bp upstream
Tssr153216	transcription start site region 153216	1028 bp upstream
Tssr153217	transcription start site region 153217	899 bp upstream
Tssr153218	transcription start site region 153218	855 bp upstream
Tssr153219	transcription start site region 153219	668 bp upstream