rs31954278 SNP Detail

Summary

• ID
  rs31954278
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44839241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCCTCCC TGTCCCTCAC
  CTCTGAGAGG ACTGCTTCAC GCTGGCAAAT GAGTCGTTCG CACTCACAGA GCTGCCGCTG
  CCAAGGAAAG AGCCTATCCA TCTCTTCACA GGCCTCCCAC ATCTCCCCTC GGCCTCCCAC
  TGCGCACCCT CCTCCCTGCA CCGTCCCTGT CCAGTCTTCC CTCAGCTGCC AGTGACACCC
  R
  TGGGTGTCAG CTGCTCTGAG GGGGACTCCA GCTGACTGCC TAGGATGTGG CATGTGGATT
  CTGACGCAAG AGCCTGTTCT CAGCAACTCC AGCGCTGACT CGGGTACAGG GAGGTGAGTA
  CACGTTCCGC ACCTTCAAAG CGTCCTTCTC TGTGGCCAAC TCCTCACTCC GCCTTTTCAC
  TCCATCTCTC TCAGCTAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46088210	mCV27567953	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G	G
ss149131042	ENSMUSSNP3131057	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31954278					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44839241 () rs orientation: forward

Symbol	Name	Function Class
Gm31097	predicted gene, 31097	within coordinates
Kash5	KASH domain containing 5	within coordinates
Tssr72334	transcription start site region 72334	1104 bp upstream
Tssr72335	transcription start site region 72335	251 bp upstream
Tssr72336	transcription start site region 72336	167 bp upstream
Tssr72337	transcription start site region 72337	104 bp upstream
Tssr72338	transcription start site region 72338	8 bp upstream