rs31954591 SNP Detail

Summary

• ID
  rs31954591
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24097478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGCACACATC CTAGAGGGCA CACATCCCGC TTATAACTCA
  GTGAATCTGG TGGCATTGAG CACTCTTCAT AAACAGCCCT CCAACCAATC ACTGCCCTGA
  Y
  GGTTACCTTG AATATGAAAA ACTCGTGCTT TCTGTCTCCA GGCTTCAACA ATAAAAAAAT
  TCTTCACGGG CTGGAGAGAA GGCTCAGCGG TTAAGAGCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss46087645	mCV25416656	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss148598556	ENSMUSSNP3425315	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss322120421	CHEV_7_25183072	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs31954591					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24097478 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18537	CpG island 18537	1133 bp proximal
Gm74022	predicted gene, 74022	958 bp downstream
Rr643435	regulatory region 643435	670 bp distal
Rr643436	regulatory region 643436	175 bp proximal
Rr643437	regulatory region 643437	1076 bp proximal
Rr643438	regulatory region 643438	1577 bp proximal
Rr643439	regulatory region 643439	1872 bp proximal
Smg9	SMG9 nonsense mediated mRNA decay factor	1628 bp upstream
Tssr64959	transcription start site region 64959	1553 bp upstream
Tssr64960	transcription start site region 64960	1621 bp upstream
Tssr64961	transcription start site region 64961	1760 bp upstream
Tssr64962	transcription start site region 64962	1906 bp upstream
Tssr64963	transcription start site region 64963	1924 bp upstream
Tssr64964	transcription start site region 64964	1960 bp upstream
Tssr71075	transcription start site region 71075	1805 bp downstream