rs31954758 SNP Detail

Summary

• ID
  rs31954758
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:46345411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCATTGT GTGCAGCTGG
  GATGCGCTAG TGCGGAGCAC AGACCCGATT CCAGCTTGTG TGCCCCCAGC ACGGGACCGC
  TCCGATGCCG CAGCCCACCC TCAGGTCCTG AGTGCCCAGC CGGGACCACG GACACAGCCC
  CAAAGCGGAG ATGCTTACCT TGCCCTTGGC AAGCAATTCC ATAATGTAGC CAAATTCACT
  Y
  ATCTCCTCTG ATTCCGACAT GGTCAAGACC CTTTAGGAAC TCTAGACCAG CCAGACGGGC
  TCATCGAATG TGGTCCTTTC CCCGCCTTTC TCTCTGTTCA GCGTGAGTTT GCCCAGCCCT
  CCTCCAGAGG CACGGTTAAA AGTAGAGAGG AGAAAGCTGA GGGCGGGGCC GTGTGGGATG
  CAGGCCCAGG AGGACCCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss49295354	NES12771705	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C		C	T	T	C
ss325609391	CHEV_18_46371998	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs31954758					SNP	T	T	T	T	T	T	C	T	T	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49295354	NES12771705	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:46345411 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10017	CpG island 10017	within coordinates
Rr352866	regulatory region 352866	within coordinates
Trim36	tripartite motif-containing 36	within coordinates
Tssr153216	transcription start site region 153216	107 bp downstream
Tssr153217	transcription start site region 153217	225 bp downstream
Tssr153218	transcription start site region 153218	251 bp downstream
Tssr153219	transcription start site region 153219	469 bp downstream