rs31954759 SNP Detail

Summary

• ID
  rs31954759
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:46345138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTTCCCG CCCACGGCAA
  TGCTGAGAAC CAGAGCTAGA ACTGTCCCTG TCCCACACAG CGACAGGCTG CGCGCGGACT
  CGGAGCTGCC TCCCGGCCTC TGAGATAACG GATCGGCGGA CCCTCCCTCT TCATCCCGCA
  CCTGCCACCC ATTCCAAGTC TCTGTGCTGT CCGGCAGCCC TTTAGTTTCC ATCCTCTCCC
  K
  CCGGGCTCCC TCACCGCTCC TCCAACTAGC TCTACGAGTC CCCTTTCTTC GACATAAAGA
  AAAGGCAGCC ACGGTGCATT GTGTGCAGCT GGGATGCGCT AGTGCGGAGC ACAGACCCGA
  TTCCAGCTTG TGTGCCCCCA GCACGGGACC GCTCCGATGC CGCAGCCCAC CCTCAGGTCC
  TGAGTGCCCA GCCGGGACCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss49295355	NES12771703	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T		G	T	G
ss325609389	CHEV_18_46371725	CHEVERUD	SCREENING_POP	f	SNP									T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs31954759					SNP	T	T	T	T	T	G	T	T	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49295355	NES12771703	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:46345138 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10017	CpG island 10017	within coordinates
Rr352866	regulatory region 352866	within coordinates
Trim36	tripartite motif-containing 36	within coordinates
Tssr153216	transcription start site region 153216	380 bp downstream
Tssr153217	transcription start site region 153217	498 bp downstream
Tssr153218	transcription start site region 153218	524 bp downstream
Tssr153219	transcription start site region 153219	742 bp downstream