rs31954943 SNP Detail

Summary

• ID
  rs31954943
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:100053938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTACTAG GATACACCTG
  TCTCCACCAC CACTCCACTT CTCAAAGGGG ATTACATGCT CCAACCACCA TGCCTTTTTT
  ACTTCTTTTT TTTTTTTTTT TTTTTTTTTT TAGCGTGAGT TCTGGGGATT CGAACTCAGA
  CCTCCGGGGT CTTTGCCTAC TACCCCCAGC TTCGCAGCCC TAGATTGTGA CTGATTCACA
  Y
  GTAGATGAGG CCTGGGCAGT TAAACAGCTC TTAAATGGTT TTCCAGACTA CCCGGAGCAC
  AGAGAGACCT CAGGAATCCC AAGCATGTGC GAGGACCTCG CCTAGCAAAC TCACAGGCTC
  TGCGGGACCC ACAGATGGCC CCGCCTCCTC CCCTGCCAAT CAACCGTCCC TCGCGCCTGC
  GCGGAGCGGC GGTCCAACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46624246	NES10400599	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31954943					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46624246	NES10400599	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100053938 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16101	CpG island 16101	within coordinates
Gm73319	predicted gene, 73319	within coordinates
Rr399185	regulatory region 399185	112 bp upstream
Rr615358	regulatory region 615358	within coordinates
Rr615359	regulatory region 615359	198 bp proximal
Rr615360	regulatory region 615360	248 bp proximal
Rr615361	regulatory region 615361	968 bp proximal
Tssr47471	transcription start site region 47471	175 bp upstream
Vamp9	vesicle-associated membrane protein 9	175 bp upstream