rs31955102 SNP Detail

Summary

• ID
  rs31955102
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135159921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACGGGTG CTAGGACTCA
  GAGCCCAGTT CTGTGCAAGA GCAGTAGGTG CTCTTAACAG TGGACATCCC CCGCCCCCGG
  CACACTATTT TGTTAACATA TATTTATTGA ATGTTTATAT GTGTGTTTGA CTGTGGCCTC
  AGCAACACTC AGGTATTAGT CAAAGGACAA CTTGCAAAAG CTGATTCTCT CCTCCTGCCA
  Y
  GTTGATCCCC GGGATCCGGG AACTCCAACT GTCAGGCTTT GCAGTAAGTG TGTCTGTCTG
  TACCAGCTGA GCCATCTCAT AGGACTACAT ATTGATATAT TGGACTAGAG GTAATGGCAT
  TGTGTTAAGA TAGGTTTTAT TTTGTTTTGT TGGGCAGGAC CGTATTATGT AGTCCAGACT
  AGTCTCCCAC TTGCTAATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45590212	mCV25168397	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss147546871	ENSMUSSNP3925161	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31955102					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135159921 () rs orientation: forward

Symbol	Name	Function Class
Gm15979	predicted gene 15979	1769 bp upstream
Gm69862	predicted gene, 69862	1319 bp upstream
Rcan3	regulator of calcineurin 3	Intron
Rr602030	regulatory region 602030	475 bp proximal
Rr602031	regulatory region 602031	1233 bp proximal
Rr602032	regulatory region 602032	1330 bp proximal
Tssr39615	transcription start site region 39615	1406 bp upstream
Tssr43991	transcription start site region 43991	1134 bp downstream