rs31955102 SNP Detail

Summary

• ID
  rs31955102
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135159921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACGGGTG CTAGGACTCA
  GAGCCCAGTT CTGTGCAAGA GCAGTAGGTG CTCTTAACAG TGGACATCCC CCGCCCCCGG
  CACACTATTT TGTTAACATA TATTTATTGA ATGTTTATAT GTGTGTTTGA CTGTGGCCTC
  AGCAACACTC AGGTATTAGT CAAAGGACAA CTTGCAAAAG CTGATTCTCT CCTCCTGCCA
  Y
  GTTGATCCCC GGGATCCGGG AACTCCAACT GTCAGGCTTT GCAGTAAGTG TGTCTGTCTG
  TACCAGCTGA GCCATCTCAT AGGACTACAT ATTGATATAT TGGACTAGAG GTAATGGCAT
  TGTGTTAAGA TAGGTTTTAT TTTGTTTTGT TGGGCAGGAC CGTATTATGT AGTCCAGACT
  AGTCTCCCAC TTGCTAATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45590212	mCV25168397	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss147546871	ENSMUSSNP3925161	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31955102					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135159921 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15072	CpG island 15072	561 bp proximal
Gm15979	predicted gene 15979	1769 bp upstream
Gm69862	predicted gene, 69862	1319 bp upstream
Rcan3	regulator of calcineurin 3	within coordinates
Tssr39615	transcription start site region 39615	1406 bp upstream
Tssr43991	transcription start site region 43991	1134 bp downstream