rs31955694 SNP Detail

Summary

• ID
  rs31955694
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:100054143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGGCCTG GGCAGTTAAA
  CAGCTCTTAA ATGGTTTTCC AGACTACCCG GAGCACAGAG AGACCTCAGG AATCCCAAGC
  ATGTGCGAGG ACCTCGCCTA GCAAACTCAC AGGCTCTGCG GGACCCACAG ATGGCCCCGC
  CTCCTCCCCT GCCAATCAAC CGTCCCTCGC GCCTGCGCGG AGCGGCGGTC CAACTGTAGC
  K
  GGCGGTTAGA AGGCGGTCCG CTTCTCTCAC TGGCCTGCTG GTTATGACGA TCACCTACAG
  CTGCGTTGCT AATGGCCGAG CGGTCCTGGC GGAGCTGGCC TTGACCGGCG GCGCCTATCA
  GGTACCTGAG GCTCACGCCT CGGCGTCTGA GGGTTCGGTT CCTCGAGGCT GGCGCACGCC
  TGGCCTCCCC TCAGGGCGCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46624247	NES10400600	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31955694					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46624247	NES10400600	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100054143 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16101	CpG island 16101	within coordinates
Gm73319	predicted gene, 73319	within coordinates
Rr399185	regulatory region 399185	within coordinates
Rr615358	regulatory region 615358	8 bp distal
Rr615359	regulatory region 615359	within coordinates
Rr615360	regulatory region 615360	43 bp proximal
Rr615361	regulatory region 615361	763 bp proximal
Tssr47471	transcription start site region 47471	within coordinates
Vamp9	vesicle-associated membrane protein 9	within coordinates