rs31955696 SNP Detail

Summary

• ID
  rs31955696
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:100054548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTGGAAG GACTCAGGGA
  CCGGGAGTCC CCGCCCCCTC CAGAAGCGCT GCCTCCGAGG CGGGAGTGGG ACTGCGCCTG
  CGCCACCCAG GGGTTGGGGC TCGTACTGCC CGCGGCCGTC TGGCGGAGAT TTATAGCCAT
  CTCCAAGTTG ATAGCCCCAT TACAAGGAAA TGACCTGCAG TTGAACACAC TTAGTGAACG
  Y
  GTAAGGGTCT CAAGACTACT TCAGTTGCAG GCAGTGAGGG CCACCTGACA GCGCAGTTTG
  GACTCTCAGC GCCCAGGGTG GGAGGGCCAT GAATTTGATG TCAGCGTGGG CTATATAGAC
  CCAGTCTTTA AAAAGTGAGA ACACAAGATG TATCACAACG TTAGAGCGCT TGCCCAGAAT
  GTGTGAGGCC CTGAGTTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46624249	NES10400602	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31955696					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46624249	NES10400602	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100054548 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16101	CpG island 16101	within coordinates
Gm73319	predicted gene, 73319	402 bp upstream
Rr399185	regulatory region 399185	197 bp downstream
Rr615358	regulatory region 615358	413 bp distal
Rr615359	regulatory region 615359	363 bp distal
Rr615360	regulatory region 615360	within coordinates
Rr615361	regulatory region 615361	358 bp proximal
Tssr47471	transcription start site region 47471	405 bp downstream
Vamp9	vesicle-associated membrane protein 9	within coordinates