TCCCT TTGCCAGGGC CACGAACGAA S GACTCCCACA GCTGAAGACA GCCCA S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
DBA/2J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|
ss45590215 | mCV22286157 | ABI | CRAMUS_MOUSE | f | SNP | C | G | G | ||
ss146897487 | ENSMUSSNP29338 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | G | |||
ss321193467 | CHEV_4_84851173 | CHEVERUD | SCREENING_POP | f | SNP | G | C | |||
SNP Consensus Information | ||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
DBA/2J |
LG/J |
SM/J |
||||
rs31956225 | SNP | C | G | G | G | C |
Location: Chr4:85123506 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi14412 | CpG island 14412 | within coordinates | ||||||
Rr594659 | regulatory region 594659 | within coordinates | ||||||
Rr594660 | regulatory region 594660 | 277 bp proximal | ||||||
Rr594661 | regulatory region 594661 | 392 bp proximal | ||||||
Sh3gl2 | SH3-domain GRB2-like 2 | mRNA-UTR | ||||||
Tssr37705 | transcription start site region 37705 | 138 bp downstream | ||||||
Tssr37706 | transcription start site region 37706 | 120 bp downstream | ||||||
Tssr37707 | transcription start site region 37707 | 77 bp downstream | ||||||
Tssr37708 | transcription start site region 37708 | 41 bp downstream | ||||||
Tssr37709 | transcription start site region 37709 | 148 bp upstream | ||||||
Tssr37710 | transcription start site region 37710 | 234 bp upstream | ||||||
Tssr37711 | transcription start site region 37711 | 249 bp upstream | ||||||
Tssr37712 | transcription start site region 37712 | 406 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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