rs31957619 SNP Detail

Summary

• ID
  rs31957619
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156135811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCA TGAATTCTTC CTAGATGATT
  Y
  TGAGTATTCA CAGGGACTCC TTAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	LG/J	SM/J
ss45590070	mCV24978741	ABI	CRAMUS_MOUSE	f	SNP	C		T
ss148125074	ENSMUSSNP4152959	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss321444929	CHEV_4_155425463	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	LG/J	SM/J
rs31957619					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156135811 () rs orientation: forward

Symbol	Name	Function Class
Gm13648	predicted gene 13648	1361 bp downstream
Rr93557	regulatory region 93557	410 bp distal
Rr97568	regulatory region 97568	403 bp proximal
Rr106662	regulatory region 106662	1091 bp distal
Tssr45000	transcription start site region 45000	881 bp upstream
Tssr45001	transcription start site region 45001	848 bp upstream
Tssr45002	transcription start site region 45002	593 bp upstream
Tssr45003	transcription start site region 45003	582 bp upstream
Tssr45004	transcription start site region 45004	558 bp upstream
Ttll10	tubulin tyrosine ligase-like family, member 10	537 bp upstream