rs31958564 SNP Detail

Summary

• ID
  rs31958564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78633771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGC CTGTGGGCTT AGTGTAAGCA
  Y
  GAGTTTCCAG GTGTAAACAA AGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45089643	mCV22632375	ABI	CRAMUS_MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs31958564					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78633771 () rs orientation: forward

Symbol	Name	Function Class
Acsl3	acyl-CoA synthetase long-chain family member 3	1829 bp upstream
Cpgi461	CpG island 461	1440 bp proximal
Rr17618	regulatory region 17618	430 bp proximal
Rr29694	regulatory region 29694	1029 bp proximal
Rr371565	regulatory region 371565	354 bp downstream
Rr396121	regulatory region 396121	1643 bp upstream
Tssr7581	transcription start site region 7581	1802 bp upstream
Tssr7582	transcription start site region 7582	1820 bp upstream
Utp14b	UTP14B small subunit processome component	1829 bp upstream