rs31959138 SNP Detail

Summary

• ID
  rs31959138
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:137548680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGTGCAC ACAGAACAAA
  AAGGGTCAGA GGTGGCTGTG TGGAGCCACC CGGGGGGCCA CTTAAGGACT CAGGTGAGAG
  ACGACATGTA GGAACATGTA AGATTCAAAT CTATAGTCCA ACCGGTATCA CGTCTCCTGG
  AGCAGACTGG ATCAGAAGGG AGTGCTTTCT CAGGGGACTA AGATGATACA GGAGGCCTGG
  Y
  CTTGCTTTCC TTCCCAACAG GACACAGCCT GCTGCACTGC ACATAATGGC CCTGGTGCCC
  CACAGGGTGG GGAGGTGCCT CAGTCAGTAA AGTCCTTGCT GAGCAAGCAT GGGGACTTTC
  GTTAGGCCCC CAAAATCAGC ATTTTAAAAT CCAGGCAGGA GCTGGATAGA CGGCTCAGTA
  ACTAGGAGCA CTGACCACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss48108442	NES11849755	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31959138					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48108442	NES11849755	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:137548680 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eps8	epidermal growth factor receptor pathway substrate 8			Intron
				Noncoding-Transcript-Variant
Rr640223	regulatory region 640223			1807 bp distal
Rr640224	regulatory region 640224			676 bp distal
Rr640225	regulatory region 640225			175 bp distal
Rr640226	regulatory region 640226			336 bp distal
Tssr63894	transcription start site region 63894			922 bp upstream
Tssr63895	transcription start site region 63895			874 bp upstream
Tssr63896	transcription start site region 63896			851 bp upstream
Tssr63897	transcription start site region 63897			650 bp upstream
Tssr63898	transcription start site region 63898			628 bp upstream