rs31960160 SNP Detail

Summary

• ID
  rs31960160
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180075435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGA CCCGAGATCT CTTCCGTATC
  Y
  CTTCTGGCAA CAGTGAATTC TCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45090126	mCV24586035	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss146378722	ENSMUSSNP3857092	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31960160					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180075435 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Psen2	presenilin 2			Intron
				Noncoding-Transcript-Variant
Rr372537	regulatory region 372537			1998 bp upstream
Rr424422	regulatory region 424422			1775 bp distal
Rr424423	regulatory region 424423			19 bp proximal
Rr424424	regulatory region 424424			270 bp proximal
Rr424425	regulatory region 424425			1005 bp proximal
Rr424426	regulatory region 424426			1884 bp proximal
Tssr15530	transcription start site region 15530			1959 bp upstream
Tssr15531	transcription start site region 15531			1915 bp upstream