rs31960187 SNP Detail

Summary

• ID
  rs31960187
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135876791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGA CAGCTACAGT GTACTCATAC
  R
  TGAAATGAAT TAAAAAAAAA AAAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45590620	mCV25111116	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss147559929	ENSMUSSNP348993	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
ss321354274	CHEV_4_135705395	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31960187					SNP	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135876791 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15099	CpG island 15099	776 bp distal
Gm68296	predicted gene, 68296	1946 bp downstream
Rr377254	regulatory region 377254	1787 bp downstream
Rr602288	regulatory region 602288	within coordinates
Rr602289	regulatory region 602289	333 bp proximal
Rr602290	regulatory region 602290	437 bp proximal
Rr602291	regulatory region 602291	952 bp proximal
Rr602292	regulatory region 602292	1032 bp proximal