rs31962476 SNP Detail

Summary

• ID
  rs31962476
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161077423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAG TCAGGAGGAG CCAAACTCAC
  S
  TCAGGAAAGA TTCTCTAATG CTTCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	DBA/2J
ss45090510	mCV24544949	ABI	CRAMUS_MOUSE	f	SNP	C	C	G
ss145910363	ENSMUSSNP1339131	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	DBA/2J
rs31962476					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161077423 () rs orientation: forward

Symbol	Name	Function Class
Cpgi926	CpG island 926	656 bp proximal
Gm70781	predicted gene, 70781	885 bp upstream
Prdx6	peroxiredoxin 6	within coordinates
Rr372334	regulatory region 372334	within coordinates
Rr396460	regulatory region 396460	1196 bp upstream
Rr396461	regulatory region 396461	1657 bp upstream
Rr421775	regulatory region 421775	1308 bp distal
Rr421776	regulatory region 421776	399 bp proximal
Rr421777	regulatory region 421777	1280 bp proximal
Rr421778	regulatory region 421778	1303 bp proximal
Tssr14577	transcription start site region 14577	1031 bp downstream
Tssr14578	transcription start site region 14578	1275 bp downstream
Tssr14579	transcription start site region 14579	1288 bp downstream
Tssr14580	transcription start site region 14580	1300 bp downstream
Tssr14581	transcription start site region 14581	1649 bp downstream