rs31962646 SNP Detail

Summary

• ID
  rs31962646
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:137546175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACA CCTTGCTTTG GAATTTGGAC
  R
  AAAGTTTATA ACCAAGATAA AAATA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48108392	NES11849925	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	A	G	G	G	G	G	A	A	G	G	A	G
ss133873194	ENSMUSSNP1964094	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31962646					SNP	G	G	G	G	A	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48108392	NES11849925	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:137546175 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eps8	epidermal growth factor receptor pathway substrate 8			Intron
				Noncoding-Transcript-Variant
Rr640222	regulatory region 640222			943 bp distal
Rr640223	regulatory region 640223			within coordinates
Rr640224	regulatory region 640224			1046 bp proximal
Rr640225	regulatory region 640225			1830 bp proximal
Tssr63894	transcription start site region 63894			1569 bp downstream
Tssr63895	transcription start site region 63895			1608 bp downstream
Tssr63896	transcription start site region 63896			1635 bp downstream
Tssr63897	transcription start site region 63897			1830 bp downstream
Tssr63898	transcription start site region 63898			1861 bp downstream