rs31962647 SNP Detail

Summary

• ID
  rs31962647
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:137546269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAG AAGCCTTGTG CGCTGCTGGA
  R
  GGTCATGTGA GCAAAGCCTG GAGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss48108394	NES11849927	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs31962647					SNP	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48108394	NES11849927	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:137546269 () rs orientation: forward

Symbol	Name	Function Class
Eps8	epidermal growth factor receptor pathway substrate 8	within coordinates
Rr640222	regulatory region 640222	1037 bp distal
Rr640223	regulatory region 640223	within coordinates
Rr640224	regulatory region 640224	952 bp proximal
Rr640225	regulatory region 640225	1736 bp proximal
Tssr63894	transcription start site region 63894	1475 bp downstream
Tssr63895	transcription start site region 63895	1514 bp downstream
Tssr63896	transcription start site region 63896	1541 bp downstream
Tssr63897	transcription start site region 63897	1736 bp downstream
Tssr63898	transcription start site region 63898	1767 bp downstream