rs31962651 SNP Detail

Summary

• ID
  rs31962651
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:137546790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCA GGCAGATACT GACTTTTGCT
  S
  TCTGTTTGGA CGATTGGGCC TCCTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss48108398	NES11849800	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G	C	C	C	C	C	G	G	C	G	C
ss133873215	ENSMUSSNP3917434	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31962651					SNP	C	C	C	G	C	C	C	C	C	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48108398	NES11849800	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:137546790 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eps8	epidermal growth factor receptor pathway substrate 8			Intron
				Noncoding-Transcript-Variant
Rr640222	regulatory region 640222			1558 bp distal
Rr640223	regulatory region 640223			within coordinates
Rr640224	regulatory region 640224			431 bp proximal
Rr640225	regulatory region 640225			1215 bp proximal
Rr640226	regulatory region 640226			1533 bp proximal
Tssr63894	transcription start site region 63894			954 bp downstream
Tssr63895	transcription start site region 63895			993 bp downstream
Tssr63896	transcription start site region 63896			1020 bp downstream
Tssr63897	transcription start site region 63897			1215 bp downstream
Tssr63898	transcription start site region 63898			1246 bp downstream