rs31962871 SNP Detail

Summary

• ID
  rs31962871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117726700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGGGGCCA AAGGCTTTGA TGGTTAGAAC AGGTGTCCTG
  CCACTCAGTT CTAGATAGCA CTGACCTGAC AAGGGGTGGG GCTGGGACCA GACCAACACA
  Y
  AGCTGGGGGA GGGAGGGAGA AACATGTGAG CGCATCTGAG AATGAAGCAG AAATGGAGCT
  GTGGCAGCTG GAGGCAACAA CAGATGGGCG AGTCTCAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45591293	mCV24295848	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss147294974	ENSMUSSNP2933217	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31962871					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117726700 () rs orientation: forward

Symbol	Name	Function Class
Ccdc24	coiled-coil domain containing 24	within coordinates
Cpgi14669	CpG island 14669	1306 bp distal
Gm17114	predicted gene 17114	945 bp upstream
Rr598242	regulatory region 598242	1454 bp distal
Rr598243	regulatory region 598243	813 bp proximal
Slc6a9	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	198 bp downstream
Tssr42995	transcription start site region 42995	1797 bp downstream
Tssr42996	transcription start site region 42996	1821 bp downstream