rs31963169 SNP Detail

Summary

• ID
  rs31963169
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97967252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAATCAAAG TCTCCTGACA
  TAGAAAACCA GGACCAGACA TTGACCAAGA ATCCTTCCAG ACTTAAGAAC CAATACCAAT
  GCTCTTCAAA CTATTCCACA AATAGGAAAG CAACCTTTCA AACTCATTCT ATAGAGCCAG
  TACTACCCTG AGACAACTGG ATAAGGACAC AATAAGAAAA TGATAAACCA AAATTTTTTT
  Y
  CTATTTTGTT TTGTTTCTTG AGATAGGATT TCTCTGTGTG AAAGAGCCCT GGCTTTCCTG
  AACTTGCTTT GTAGATGAGC CTAATCTTGA ACTCACTAAG ATCCACCTAC CTTTAGTGAA
  AATAAACCAA ATCCTTTGAT GAACATAGAT GTAAAAATCC TAAATAAGTT CCAAAGAAAA
  CTCAACACAA TAGGAACAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39345617	mCV25403616	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss148449724	ENSMUSSNP1453245	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31963169					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97967252 () rs orientation: forward

Symbol	Name	Function Class
Gm25668	predicted gene, 25668	383 bp upstream
Rr305744	regulatory region 305744	349 bp proximal
Rr315538	regulatory region 315538	652 bp distal
Rr315539	regulatory region 315539	949 bp proximal
Rr370004	regulatory region 370004	1654 bp downstream
Senp1	SUMO1/sentrin specific peptidase 1	within coordinates