rs31963612 SNP Detail

Summary

• ID
  rs31963612
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:137547198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATACTAAAA GACCAAAATT
  ATAAACTTAG ATAGTTTAAA AATAGTTGTT CCCTTTACAA CTTCCACTAA TTGACTATTT
  AAATATTTAC AAGTTCCATT AATATACACA GATTTAAAAA ACAAAAACTT TAAGTACACA
  TATCTAACTA CAGTTTCAGT CCCAAGCAAA ATGTTTGCAG GGAAGTTTGG CCATGTTCAG
  Y
  CTGTGGGCTC AGAGCCAACA ATAACCTTTG AAGGTTAAAT TTGAGTAATA AGCAAATTTT
  CATAGTACCA CTAACCCTGT ACAAACAATT CAAGGCGGTT AATATTTATA GCATAATCAA
  GGTGTTTTGC ATATACGATT CGTTTTATAG CTTCAGAACT ATGAATAGTC CTCCGATCCC
  ATCCTAGCCA AGAGACGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48108410	NES11849816	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31963612					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48108410	NES11849816	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:137547198 () rs orientation: forward

Symbol	Name	Function Class
Eps8	epidermal growth factor receptor pathway substrate 8	within coordinates
Rr640222	regulatory region 640222	1966 bp distal
Rr640223	regulatory region 640223	325 bp distal
Rr640224	regulatory region 640224	23 bp proximal
Rr640225	regulatory region 640225	807 bp proximal
Rr640226	regulatory region 640226	1125 bp proximal
Tssr63894	transcription start site region 63894	546 bp downstream
Tssr63895	transcription start site region 63895	585 bp downstream
Tssr63896	transcription start site region 63896	612 bp downstream
Tssr63897	transcription start site region 63897	807 bp downstream
Tssr63898	transcription start site region 63898	838 bp downstream