rs31964456 SNP Detail

Summary

• ID
  rs31964456
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:137547493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGTTAATA TTTATAGCAT
  AATCAAGGTG TTTTGCATAT ACGATTCGTT TTATAGCTTC AGAACTATGA ATAGTCCTCC
  GATCCCATCC TAGCCAAGAG ACGAACAGGG AGGTTACTCT CCTAAGCACC AGGCTCTTAG
  GAAGAAAGGC CTTTAACTCC CCAAGCAAGG AAAAGGGGAG GGAAAGAAGA GGTCAGGTGG
  Y
  TGTGGACACT AAAGCATCCC AAGATCTTAC CAGGTTTAGA AGCCACTAGG AATGCCAAGA
  AGGGAATTTA AAAAAAACAA GTGAAAGTTC CTACTTGCCC TAAAAATACT ACTGCCTTTC
  AAGGTCTACA CACATCTTCT GTCATAATTA ACGCCTTTGA GCAAAGCCCC CATTAGCAAG
  GAAAATATTC ACAAGCTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48108414	NES11849822	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31964456					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48108414	NES11849822	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:137547493 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eps8	epidermal growth factor receptor pathway substrate 8			Intron
				Noncoding-Transcript-Variant
Rr640223	regulatory region 640223			620 bp distal
Rr640224	regulatory region 640224			within coordinates
Rr640225	regulatory region 640225			512 bp proximal
Rr640226	regulatory region 640226			830 bp proximal
Tssr63894	transcription start site region 63894			251 bp downstream
Tssr63895	transcription start site region 63895			290 bp downstream
Tssr63896	transcription start site region 63896			317 bp downstream
Tssr63897	transcription start site region 63897			512 bp downstream
Tssr63898	transcription start site region 63898			543 bp downstream