rs31964560 SNP Detail

Summary

• ID
  rs31964560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82983958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCAGCCTCC TGAATGCACC CCGTGCCCAC AGTCTGACTC
  TGAGTTCTTC TCGGGACTGA AACTGTTTTC AGTCCTTCCT TGCCTGGGGA TGGTTTCTGC
  Y
  AGAGCCCTCG CTTTATACAT TCATTTATTC ATTCAGGCCG TGCAATCAAT TATCAAAGCT
  GGATAGCGCC AGGCACTGCT GAGGGACCGC AGCCACCGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39346382	mCV22803383	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss148234850	ENSMUSSNP1014009	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31964560					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82983958 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7437	CpG island 7437	94 bp proximal
Rr310854	regulatory region 310854	1856 bp distal
Rr312184	regulatory region 312184	within coordinates
Rr404540	regulatory region 404540	262 bp upstream
Serhl	serine hydrolase-like	436 bp upstream
Tssr132408	transcription start site region 132408	444 bp upstream
Tssr132409	transcription start site region 132409	524 bp upstream
Tssr132410	transcription start site region 132410	549 bp upstream