rs31964839 SNP Detail

Summary

• ID
  rs31964839
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148711552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCCCCCTA CGTAACGCGG TAGATGGCTT CGCCTGACCA
  ACGGCCGGCC CTAGTCGAGG AGCTCGCGCG CGCCGAGAAT GCGCGAGACT AGCGCAGGCC
  S
  GGACTGGGGC GGCAGGGGCG GGGCTAGGAG GGAAAGGGGG CGGAGCCTGC GACTGAACGC
  GTAAGGGCTT GGGGGGGAAT CCCTGGGAAC CCTGGGTTC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45591507	mCV24948361	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss148013303	ENSMUSSNP2587285	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31964839					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148711552 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15308	CpG island 15308	within coordinates
Rr100546	regulatory region 100546	within coordinates
Rr398860	regulatory region 398860	within coordinates
Tardbp	TAR DNA binding protein	76 bp upstream
Tssr44612	transcription start site region 44612	349 bp upstream
Tssr44613	transcription start site region 44613	320 bp upstream
Tssr44614	transcription start site region 44614	62 bp upstream