rs31965806 SNP Detail

Summary

• ID
  rs31965806
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149718952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCT GCCTCTGCCT CTCAAGTACT
  S
  AGGTTACTAT CTGTGTACTA TTAAT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45591619	mCV24218912	ABI	CRAMUS_MOUSE	f	SNP	G	C	G	G
ss321426350	CHEV_4_149008604	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31965806					SNP	G	C	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149718952 () rs orientation: forward

Symbol	Name	Function Class
Clstn1	calsyntenin 1	within coordinates
Gm70063	predicted gene, 70063	within coordinates
Rr103738	regulatory region 103738	within coordinates
Rr103739	regulatory region 103739	1649 bp proximal
Tssr40351	transcription start site region 40351	196 bp upstream
Tssr40352	transcription start site region 40352	745 bp upstream