rs31965902 SNP Detail

Summary

• ID
  rs31965902
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43425405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACCCCCGC CAGCCAGGGC AGCTGTAGGC ACCAGCTGTC
  CCTTAGCCAA CCACACCCAG CCCAGTCCAG CTGTCCTTCA CTGGAGTTCA GCAAGGTGGA
  R
  GGAGAGACTT CACTGGTTGT GGACAGACCT CACAGGTCCC TAATATTCTA CATGTTGGGA
  CATCAAAAAT GAGGTCCTTA CCCAGTAGTT AGCCCCTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46089493	mCV23832670	ABI	CRAMUS_MOUSE	f	SNP	G					A
ss61001522	NES16126562	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	A	G	G	G	A	G	G
ss149083640	ENSMUSSNP4980856	ENSEMBL	ENSEMBL_Sanger	f	SNP	G					A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31965902					SNP	G	G	G	G	A	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61001522	NES16126562	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43425405 () rs orientation: forward

Symbol	Name	Function Class
Klk11	kallikrein related-peptidase 11	within coordinates
Tssr66041	transcription start site region 66041	1359 bp downstream
Tssr66042	transcription start site region 66042	1345 bp downstream
Tssr66043	transcription start site region 66043	1333 bp downstream
Tssr66044	transcription start site region 66044	1317 bp downstream
Tssr66045	transcription start site region 66045	285 bp upstream