rs31966464 SNP Detail

Summary

• ID
  rs31966464
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18998958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGAAAAC AGAGGGGCCA
  GTCACATTCT CCTTAGATCC ATATAGTAGA TACAGGAACT GATTGCAGCC TGTACATGAA
  TATACAGGGG TGTGGCTGTA CATGCATGAC TGGGAGTGTT GCTCAGTGGT TAGAGACCCT
  GACTAGAAAC CCCAATGAGG GGCTGGGGGT GTGGCTCAAT AGTAGCGTGT TTGCCCAGCT
  K
  GCTGGCCCGG GCCCTTGGTT GAATCCACAG TACTATAAAA GAAGATAGGT TGATAGGTGA
  GTAGTACCAT GTAGTGAACA GATAGGCAGG CCACACACAG GAAGAGGCAG AAAAGAGATA
  AAGTAGGGTC CATAAGGCTT GAGCTGGCGA CCAGAGAGCT TGCTCGAGGT CCTGGGCTCA
  GCCTCTACAG CCTTAATCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss46088775	mCV25048892	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs31966464					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18998958 () rs orientation: forward

Symbol	Name	Function Class
Tssr64812	transcription start site region 64812	1263 bp upstream
Tssr70883	transcription start site region 70883	550 bp upstream
Tssr70884	transcription start site region 70884	205 bp upstream
Tssr70885	transcription start site region 70885	956 bp downstream
Tssr70886	transcription start site region 70886	1509 bp downstream
Vasp	vasodilator-stimulated phosphoprotein	within coordinates