rs31966692 SNP Detail

Summary

• ID
  rs31966692
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44840389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTACCTAC TTATGACAAC
  TTATTTCCTT TAGTAAAATG TAATTCCAGA GTTGGCAACA AAATCACCCC GTCTTCTTGT
  ATTCCACCTA GGGTGTTGGC CTGTGGCAGA CATATGCCCC CAGATGTGGA CCCCTGTAGT
  GACTTCACAG TCACCTGCAA GCAGGTGGGT AGATCCAGGG CTGGCACTGT CCATATTACA
  Y
  TGGCTCTGTA AGTGTGTGGC TATATAGCCA TTAATAGCAT CCTTCCCTTC AGCTCTACAG
  GAGGAACTGA ACAGAGGCTA CGAGACTTGG CAAGGCTGCC CCATCTGTGT GATGCCCAGT
  CCCACCTCTA ACACTCAGCC TCTGGGGGGG CGCAGATAAA ACTCTGGGTG ACAAAAGCCT
  CGTGAGAAGT GGTGGTGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46089503	mCV27567980	ABI	CRAMUS_MOUSE	f	SNP	T	C	T					T	T
ss51480567	NES13972102	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T	T	C	T	C	T
ss149131072	ENSMUSSNP3229861	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31966692					SNP	T	C	T	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51480567	NES13972102	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44840389 () rs orientation: forward

Symbol	Name	Function Class
Gm31097	predicted gene, 31097	within coordinates
Kash5	KASH domain containing 5	within coordinates
Rr646366	regulatory region 646366	736 bp proximal
Tssr72335	transcription start site region 72335	1399 bp upstream
Tssr72336	transcription start site region 72336	1315 bp upstream
Tssr72337	transcription start site region 72337	1252 bp upstream
Tssr72338	transcription start site region 72338	1156 bp upstream