rs31967277 SNP Detail

Summary

• ID
  rs31967277
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4841204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTATAATCA CTTCTGAATC CAGTCTGTAC
  TTTAACTTTG CCAGGATGTG GAAGCAAGAG CATCAAGCCA ACAGGATGAC TACACAGTCC
  TGTTACGTAT CCTTCAGCAG CCCTAACCCT GGCCTTAAAC AAAATCCCTT GACAACCCTT
  Y
  TAAGTTCCTC tgtgtgtctg tctgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
  tgtgtgtgta tgtATAGTTG CCAGCTTAGA AATATAAAAT CCATTATTTA AAATTAGTTT
  TCGGGCAGCT AGTAGAGGAC ACGGGCAAGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss45090655	mCV24645055	ABI	CRAMUS_MOUSE	f	SNP	T					C
ss50908920	NES13484804	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	C	C		T	T		C
ss148476121	ENSMUSSNP4978865	ENSEMBL	ENSEMBL_Sanger	f	SNP	T					C
ss319612288	CHEV_1_4761062	CHEVERUD	SCREENING_POP	f	SNP							C			T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs31967277					SNP	T	T	C	C	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50908920	NES13484804	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4841204 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	150 bp upstream
Rr407423	regulatory region 407423	651 bp distal
Rr407424	regulatory region 407424	905 bp distal
Tssr5799	transcription start site region 5799	113 bp upstream