rs31967494 SNP Detail

Summary

• ID
  rs31967494
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:13012329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTATTCT CAATGTGTAT
  CTTCGTTTTG GACACGGCGC CTTGTCCTCA GATGGGCTTC TTCACTACTA ATGCTCCCCC
  GGGCCCCCAC GTCCCGCTGA GCCTCTTGTC CCTTGCACAG CCCCTTTTAT CCAGTTCCCA
  CCTCTCGAGA CTCTCTCAAC CTGTCTCTCC GCTGCTCCTC CCGGCCTGAC CATCCCACAT
  M
  GCGGTGCTTC TCCACTCCTA AAGCTGTGCA CCCTTCCGGC CCCCTCCCCC TCAACTCACC
  TACCCAACCC AAAGCGGCGT CCACCTCCCA CAATGCCTCG CGCCCAAGCC CAGCCCGGCC
  CTTGCTCCCG GGATGCCCCG CGCGGTATCC CGCCTTTCTT CCCCTAGTGC CTGGCAAGGT
  GGCTTTCCAC CAACCCTTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46088677	mCV22927752	ABI	CRAMUS_MOUSE	f	SNP		C	A	A
ss148344321	ENSMUSSNP1636726	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31967494					SNP	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:13012329 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18339	CpG island 18339	within coordinates
Lig1	ligase I, DNA, ATP-dependent	Intron
Rr400108	regulatory region 400108	238 bp upstream
Rr642459	regulatory region 642459	270 bp distal
Rr642460	regulatory region 642460	within coordinates
Rr642461	regulatory region 642461	23 bp proximal
Rr642462	regulatory region 642462	270 bp proximal
Rr642463	regulatory region 642463	424 bp proximal
Rr642464	regulatory region 642464	873 bp proximal
Tssr64537	transcription start site region 64537	1189 bp downstream
Tssr64538	transcription start site region 64538	1133 bp downstream
Tssr64539	transcription start site region 64539	141 bp upstream
Tssr64540	transcription start site region 64540	375 bp upstream
Tssr64541	transcription start site region 64541	473 bp upstream
Tssr70659	transcription start site region 70659	258 bp downstream
Zswim9	zinc finger SWIM-type containing 9	Intron