rs31968448 SNP Detail

Summary

• ID
  rs31968448
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84741446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACAGTATTG GTCACAGTCG ACAAAGATGA CAACGATCTA
  ACTGGCTGAC TAAACTGGTT CCTCCCACTT CTGGGTTAGA CTCAAGTCAA GACAATGTCT
  Y
  CCACTCCCCA TTTTTTCTTT CAACCCCCCC CCCCATTTTG TAGTTAGAGG TGCAGAGGAT
  CCAGGGGCTG GAGCATACTA GGCAAGCCTC TGTTACAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39346680	mCV23859068	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss148258168	ENSMUSSNP7051100	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31968448					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84741446 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7469	CpG island 7469	651 bp distal
Phf21b	PHD finger protein 21B	1196 bp upstream
Rr507073	regulatory region 507073	1645 bp distal
Rr507074	regulatory region 507074	706 bp distal
Rr507075	regulatory region 507075	321 bp proximal
Tssr135731	transcription start site region 135731	1213 bp upstream
Tssr135732	transcription start site region 135732	1188 bp upstream
Tssr135733	transcription start site region 135733	1154 bp upstream
Tssr135734	transcription start site region 135734	1134 bp upstream
Tssr135735	transcription start site region 135735	1106 bp upstream
Tssr135736	transcription start site region 135736	699 bp upstream