rs31969344 SNP Detail

Summary

• ID
  rs31969344
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63131625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG TGACACAAGT CTTGAGAGTC
  Y
  GGCACTGAGT TCAGTGGCCC TTGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45591557	mCV22875328	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss146440573	ENSMUSSNP1734210	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
ss321144710	CHEV_4_62874422	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31969344					SNP	C	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63131625 () rs orientation: forward

Symbol	Name	Function Class
Col27a1	collagen, type XXVII, alpha 1	621 bp upstream
Cpgi14368	CpG island 14368	584 bp proximal
Rr593488	regulatory region 593488	288 bp proximal
Rr593489	regulatory region 593489	552 bp proximal
Rr593490	regulatory region 593490	1074 bp proximal
Rr593491	regulatory region 593491	1557 bp proximal
Rr593492	regulatory region 593492	1907 bp proximal
Tssr1192	transcription start site region 1192	636 bp upstream
Tssr37533	transcription start site region 37533	700 bp upstream
Tssr37534	transcription start site region 37534	746 bp upstream