rs31970504 SNP Detail

Summary

• ID
  rs31970504
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135693447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACT AGCTTTTGGC AGAGGCTGGG
  S
  GACCAGAACT CTCGTGCTCT GAGAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45091129	mCV23239860	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss145545541	ENSMUSSNP232184	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss319993138	CHEV_1_137662286	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31970504					SNP	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135693447 () rs orientation: forward

Symbol	Name	Function Class
Cpgi797	CpG island 797	within coordinates
Gm70736	predicted gene, 70736	714 bp downstream
Phlda3	pleckstrin homology like domain, family A, member 3	410 bp upstream
Rr372092	regulatory region 372092	within coordinates
Rr419268	regulatory region 419268	1482 bp distal
Rr419269	regulatory region 419269	within coordinates
Tssr223	transcription start site region 223	361 bp upstream
Tssr224	transcription start site region 224	480 bp upstream
Tssr8974	transcription start site region 8974	376 bp upstream
Tssr8975	transcription start site region 8975	498 bp upstream
Tssr8976	transcription start site region 8976	509 bp upstream
Tssr8977	transcription start site region 8977	528 bp upstream
Tssr8978	transcription start site region 8978	532 bp upstream