rs31970935 SNP Detail

Summary

• ID
  rs31970935
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:105283833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATC GCGCTCCCAA CTCAAAGCAA
  W
  GCCCGAGGAA AACCCAACTC CCGGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45091586	mCV25150509	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss145082622	ENSMUSSNP5741719	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss319882710	CHEV_1_107252685	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs31970935					SNP	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:105283833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi626	CpG island 626	within coordinates
Gm17634	predicted gene, 17634	within coordinates
Rnf152	ring finger protein 152	within coordinates
Rr416387	regulatory region 416387	91 bp distal
Rr416388	regulatory region 416388	within coordinates
Rr416389	regulatory region 416389	60 bp distal
Rr416390	regulatory region 416390	451 bp proximal
Rr416391	regulatory region 416391	552 bp proximal
Rr416392	regulatory region 416392	635 bp proximal
Tssr8255	transcription start site region 8255	609 bp upstream
Tssr8256	transcription start site region 8256	661 bp upstream
Tssr8257	transcription start site region 8257	738 bp upstream
Tssr8258	transcription start site region 8258	951 bp upstream
Tssr13126	transcription start site region 13126	372 bp downstream
Tssr13127	transcription start site region 13127	532 bp downstream
Tssr13128	transcription start site region 13128	550 bp downstream
Tssr13129	transcription start site region 13129	661 bp downstream
Tssr13130	transcription start site region 13130	826 bp downstream