rs31971046 SNP Detail

Summary

• ID
  rs31971046
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:77040916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGCCCTT TGTAGCACAC
  ACCTTGTCTT CTAGGCTCCA GCTGCCTGTA CTCCACTGTT GCTGCTGTTC TTGGTGGTCA
  TCTCATGTAA AAGAACAGCA GGCTTGGAAG ATCCCACCAT GTATATCCAA GTGGAAGAAC
  CCGAAGGGTT ATAAAATTCC ACTGGATAAA TGGCTGGCTT CTGATGAAAG GCTTCACATG
  R
  GTCATATAAG TGAAAAATTT GACAAACTGG CTGAAGTGCT TTCCAGAGCA GCTGTGAGCC
  CACATCAGTT TACCTCAGTT CCAGAGGGAA ACTGACGTGT GTGTGTATGA TAATAGCAGA
  AGAGGTTAGT GCAGCTAAGG AGGTTTGACG AGCTGAAGGA GTTGAAGCTG AGTAAGGAAT
  TCCAGGACTT AGAGGAAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45091531	mCV23073447	ABI	CRAMUS_MOUSE	f	SNP	G	A					A		A
ss60754650	NES16397719	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A		G	A	A	A	G		A	A	G	A
ss144722356	ENSMUSSNP2697623	ENSEMBL	ENSEMBL_Sanger	f	SNP		A											G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31971046					SNP	G	A	A	A	G	A	A	G	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60754650	NES16397719	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:77040916 () rs orientation: forward

Symbol	Name	Function Class
Gm70876	predicted gene, 70876	within coordinates
Tfdp1-ps	transcription factor Dp 1, pseudogene	1591 bp upstream
Tssr7562	transcription start site region 7562	1587 bp upstream