rs31971057 SNP Detail

Summary

• ID
  rs31971057
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133093417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAGGATCCC AAATAACAGA ACTTCTCCAT GATTAAAATC
  AGAGTCCCTT CCCTTCCATC AGAGGCTTGA ATCCATAAGA ATCATCAAGG TTGGCCGGGC
  R
  TGGTGGCGCA GGCCTTTAAT CCCAGCACTC CGGAGGCAGA GGCAGGCGGA TTTCTGAGTT
  CAAGGCCAGC CTGGTCTACA AAGTGAGTTC CAGGACAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45091242	mCV24901134	ABI	CRAMUS_MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs31971057					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133093417 () rs orientation: forward

Symbol	Name	Function Class
Cpgi742	CpG island 742	854 bp distal
Plekha6	pleckstrin homology domain containing, family A member 6	within coordinates
Tssr211	transcription start site region 211	1734 bp downstream
Tssr8784	transcription start site region 8784	1758 bp downstream
Tssr8785	transcription start site region 8785	1640 bp downstream