rs31971529 SNP Detail

Summary

• ID
  rs31971529
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100167922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG ACTACACCCT ATCCTGCATG
  W
  GGTCACCTGC CGCTGGGCTC AAAGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39346860	mCV25252460	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	T
ss148473234	ENSMUSSNP2682656	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs31971529					SNP	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100167922 () rs orientation: forward

Symbol	Name	Function Class
Gm56733	predicted gene, 56733	1 bp upstream
Rr391198	regulatory region 391198	within coordinates
Tssr4717	transcription start site region 4717	47 bp upstream
Tssr133109	transcription start site region 133109	851 bp downstream
Tssr133110	transcription start site region 133110	1644 bp upstream