rs31973754 SNP Detail

Summary

• ID
  rs31973754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46137288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGAATATAT TAAAATCCTT TCTTGGAGGA CTCTTCCAAA
  GTCTTACTCT GGATAATCTG TCCTCAATAG CAAAGGATGA GTGATAATTT GTACCACTCG
  Y
  CCTTTGCTAT TAAGTCCGTC AGACTACAGT ACCTGTGATC ATTCCTGAGA GGGTCACTTA
  GGGCTTCAGT ATCCTGAACA CCGTCTCGTT GTCCCATGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45592801	mCV22985038	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss146261764	ENSMUSSNP4643000	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss321104088	CHEV_4_46150160	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31973754					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46137288 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14246	CpG island 14246	875 bp proximal
Ncbp1	nuclear cap binding protein subunit 1	1444 bp upstream
Rr591548	regulatory region 591548	451 bp proximal
Rr591549	regulatory region 591549	1140 bp proximal
Rr591550	regulatory region 591550	1336 bp proximal
Rr591551	regulatory region 591551	1416 bp proximal
Tssr37109	transcription start site region 37109	1196 bp upstream
Tssr37110	transcription start site region 37110	1241 bp upstream
Tssr37111	transcription start site region 37111	1289 bp upstream
Tssr37112	transcription start site region 37112	1424 bp upstream
Tssr37113	transcription start site region 37113	1533 bp upstream
Tssr41557	transcription start site region 41557	1068 bp downstream
Tssr41558	transcription start site region 41558	1110 bp downstream
Tssr41559	transcription start site region 41559	1379 bp downstream
Tstd2	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	within coordinates