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rs31974191 SNP Detail
Summary
  • ID
    rs31974191
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr15:44291239 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GTTGA AAGGTCCGCG CTTCACTCCT
    K
    GAACTGAGGC TGGGAAACGG CGTGG                                      
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss39347279 mCV23734680 ABI CRAMUS_MOUSE f SNP T G G T
ss49467399 NES12601164 PERLEGEN MM_PANEL2 f SNP G G G G G G G T G G G T G G G
ss147795893 ENSMUSSNP7029234 ENSEMBL ENSEMBL_Sanger f SNP G T
ss324945880 CHEV_15_44259389 CHEVERUD SCREENING_POP f SNP G T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs31974191 SNP ? G G G G G G G T G G G G T G G T G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49467399 NES12601164 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:44291239 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi7073 CpG island 7073 within coordinates
Eny2 ENY2 transcription and export complex 2 subunit 249 bp upstream
Nudcd1 NudC domain containing 1 within coordinates
Rr311712 regulatory region 311712 within coordinates
Rr404372 regulatory region 404372 within coordinates
Tssr131224 transcription start site region 131224 430 bp downstream
Tssr131225 transcription start site region 131225 230 bp upstream
Tssr134195 transcription start site region 134195 30 bp upstream
Tssr134196 transcription start site region 134196 within coordinates
Tssr134197 transcription start site region 134197 460 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory