GTTGA AAGGTCCGCG CTTCACTCCT K GAACTGAGGC TGGGAAACGG CGTGG K = G/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss39347279 | mCV23734680 | ABI | CRAMUS_MOUSE | f | SNP | T | G | G | T | ||||||||||||||
ss49467399 | NES12601164 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | G | T | G | G | G | T | G | G | G | |||
ss147795893 | ENSMUSSNP7029234 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | T | ||||||||||||||||
ss324945880 | CHEV_15_44259389 | CHEVERUD | SCREENING_POP | f | SNP | G | T | ||||||||||||||||
SNP Consensus Information | |||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
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rs31974191 | SNP | ? | G | G | G | G | G | G | G | T | G | G | G | G | T | G | G | T | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss49467399 | NES12601164 | PERLEGEN | MM_PANEL | f | SNP | G/T |
Location: Chr15:44291239 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi7073 | CpG island 7073 | within coordinates | ||||||
Eny2 | ENY2 transcription and export complex 2 subunit | 249 bp upstream | ||||||
Nudcd1 | NudC domain containing 1 | within coordinates | ||||||
Rr311712 | regulatory region 311712 | within coordinates | ||||||
Rr404372 | regulatory region 404372 | within coordinates | ||||||
Tssr131224 | transcription start site region 131224 | 430 bp downstream | ||||||
Tssr131225 | transcription start site region 131225 | 230 bp upstream | ||||||
Tssr134195 | transcription start site region 134195 | 30 bp upstream | ||||||
Tssr134196 | transcription start site region 134196 | within coordinates | ||||||
Tssr134197 | transcription start site region 134197 | 460 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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