rs31975089 SNP Detail

Summary

• ID
  rs31975089
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:164146470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTGAACAC AATCCCTGGT AAACTCCCAG AGGCTAATTT
  TGCAGAAACT GACAAGCCCA TTCTGCCTTT GAGATGGTAA CATGAAGTAC TGAAGTTAGC
  Y
  GAGGCGGTGT GTATGTGTGT GCATGAGTGG AAGCGAAGAG GCCAGAGGTC AACACTGGGT
  GTCTGCCTAT TTATTTCCCA TCTTACCTTC TGAGTTCGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45092214	mCV23038123	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss145976305	ENSMUSSNP7075219	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31975089					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164146470 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nme7	NME/NM23 family member 7			Intron
				Noncoding-Transcript-Variant
Rr422182	regulatory region 422182			1750 bp distal
Rr422183	regulatory region 422183			1984 bp distal
Rr422184	regulatory region 422184			1362 bp distal
Rr422185	regulatory region 422185			774 bp proximal
Rr422186	regulatory region 422186			1841 bp proximal